survex: an R package for explaining machine learning survival models

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  • Mikołaj Spytek
  • Mateusz Krzyziński
  • Sophie Hanna Langbein
  • Hubert Baniecki
  • Marvin N. Wright
  • Przemysław Biecek
Summary
Due to their flexibility and superior performance, machine learning models frequently complement and outperform traditional statistical survival models. However, their widespread adoption is hindered by a lack of user-friendly tools to explain their internal operations and prediction rationales. To tackle this issue, we introduce the survex R package, which provides a cohesive framework for explaining any survival model by applying explainable artificial intelligence techniques. The capabilities of the proposed software encompass understanding and diagnosing survival models, which can lead to their improvement. By revealing insights into the decision-making process, such as variable effects and importances, survex enables the assessment of model reliability and the detection of biases. Thus, transparency and responsibility may be promoted in sensitive areas, such as biomedical research and healthcare applications.
OriginalsprogEngelsk
Artikelnummerbtad723
TidsskriftBioinformatics
Vol/bind39
Udgave nummer12
Antal sider4
ISSN1367-4803
DOI
StatusUdgivet - 2023

Bibliografisk note

Funding Information:
This work was supported by the National Science Centre [SONATA BIS 9 grant 2019/34/E/ST6/00052]; the Polish National Centre for Research and Development [INFOSTRATEG-I/0022/2021-00]; and the German Research Foundation (DFG) [Grants 437611051, 459360854].

Publisher Copyright:
© The Author(s) 2023. Published by Oxford University Press.

ID: 379635008