Conditional feature importance for mixed data

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

  • Kristin Blesch
  • David S. Watson
  • Marvin N. Wright
Despite the popularity of feature importance (FI) measures in interpretable machine learning, the statistical adequacy of these methods is rarely discussed. From a statistical perspective, a major distinction is between analysing a variable’s importance before and after adjusting for covariates—i.e., between marginal and conditional measures. Our work draws attention to this rarely acknowledged, yet crucial distinction and showcases its implications. We find that few methods are available for testing conditional FI and practitioners have hitherto been severely restricted in method application due to mismatched data requirements. Most real-world data exhibits complex feature dependencies and incorporates both continuous and categorical features (i.e., mixed data). Both properties are oftentimes neglected by conditional FI measures. To fill this gap, we propose to combine the conditional predictive impact (CPI) framework with sequential knockoff sampling. The CPI enables conditional FI measurement that controls for any feature dependencies by sampling valid knockoffs—hence, generating synthetic data with similar statistical properties—for the data to be analysed. Sequential knockoffs were deliberately designed to handle mixed data and thus allow us to extend the CPI approach to such datasets. We demonstrate through numerous simulations and a real-world example that our proposed workflow controls type I error, achieves high power, and is in-line with results given by other conditional FI measures, whereas marginal FI metrics can result in misleading interpretations. Our findings highlight the necessity of developing statistically adequate, specialized methods for mixed data.
OriginalsprogEngelsk
TidsskriftAStA Advances in Statistical Analysis
ISSN1863-8171
DOI
StatusAccepteret/In press - 2024

Bibliografisk note

Funding Information:
MNW and KB received funding for this project from the German Research Foundation (DFG), Emmy Noether Grant 437611051.

Publisher Copyright:
© 2023, The Author(s).

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