Next-generation sequencing technology for genetics and genomics of sorghum

Publikation: Bidrag til bog/antologi/rapportBidrag til bog/antologiForskningfagfællebedømt

Standard

Next-generation sequencing technology for genetics and genomics of sorghum. / Luo, Hong; Mocoeur, Anne Raymonde Joelle; Jing, Hai-Chun.

Genetics, genomics and breeding of sorghum. red. / Yi-Hong Wang; Hari D. Upadhyaya; Chittaranjan Kole. CRC Press, 2014. s. 226-250.

Publikation: Bidrag til bog/antologi/rapportBidrag til bog/antologiForskningfagfællebedømt

Harvard

Luo, H, Mocoeur, ARJ & Jing, H-C 2014, Next-generation sequencing technology for genetics and genomics of sorghum. i Y-H Wang, HD Upadhyaya & C Kole (red), Genetics, genomics and breeding of sorghum. CRC Press, s. 226-250. <http://www.crcnetbase.com/doi/book/10.1201/b17153>

APA

Luo, H., Mocoeur, A. R. J., & Jing, H-C. (2014). Next-generation sequencing technology for genetics and genomics of sorghum. I Y-H. Wang, H. D. Upadhyaya, & C. Kole (red.), Genetics, genomics and breeding of sorghum (s. 226-250). CRC Press. http://www.crcnetbase.com/doi/book/10.1201/b17153

Vancouver

Luo H, Mocoeur ARJ, Jing H-C. Next-generation sequencing technology for genetics and genomics of sorghum. I Wang Y-H, Upadhyaya HD, Kole C, red., Genetics, genomics and breeding of sorghum. CRC Press. 2014. s. 226-250

Author

Luo, Hong ; Mocoeur, Anne Raymonde Joelle ; Jing, Hai-Chun. / Next-generation sequencing technology for genetics and genomics of sorghum. Genetics, genomics and breeding of sorghum. red. / Yi-Hong Wang ; Hari D. Upadhyaya ; Chittaranjan Kole. CRC Press, 2014. s. 226-250

Bibtex

@inbook{b69a0e043ef64ba799779f3035ceb18c,
title = "Next-generation sequencing technology for genetics and genomics of sorghum",
abstract = "The invention and application of Next-Generation Sequencing (NGS) technologies have revolutionized the study of genetics and genomics. Much research which would not even be considered are nowdays being excuted in many laboratories as routine. In this chapter, we introduce the currently available NGS platforms, comparing their working theories and reveiwing their advantages and disavantages. We also discuss the future of NGS development and point out that single molecular sequencing would push the technology to the next level for biological sciences. Much of the chapter focuses on the use of NGS technologies in sorghum. Although the acquisition of the first whole-genome sequence in sorghum was carried out primarily using Sanger sequencing, the use of NGS for examining the genome-wide variation was almost synchronized with other work. Interesting genomic variation was found between sweet and grain sorghum. NGS has also been used to examine the transcriptomes of sorghum under various stress conditions. Besides identifying interesting transcriptonal adpatation to stress conditions, these study show that sugar could potentially act as an osmitic adjusting factor via transcriptional regulation. Furthermore, miRNAs are found to be important adaptation to both biotic and abiotic stresses in sorghum. We discuss the use of NGS for further genetic improvement and breeding in sorghum.",
keywords = "Former LIFE faculty, Sorghum bicolour L.; Quality Declared Seed System, Next generation sequencing, Genetic, genomic variation, molecular breeding, biofuel-associated traits, Association analysis",
author = "Hong Luo and Mocoeur, {Anne Raymonde Joelle} and Hai-Chun Jing",
year = "2014",
language = "English",
isbn = "978-1-4822-1008-8",
pages = "226--250",
editor = "Yi-Hong Wang and Upadhyaya, {Hari D.} and Chittaranjan Kole",
booktitle = "Genetics, genomics and breeding of sorghum",
publisher = "CRC Press",

}

RIS

TY - CHAP

T1 - Next-generation sequencing technology for genetics and genomics of sorghum

AU - Luo, Hong

AU - Mocoeur, Anne Raymonde Joelle

AU - Jing, Hai-Chun

PY - 2014

Y1 - 2014

N2 - The invention and application of Next-Generation Sequencing (NGS) technologies have revolutionized the study of genetics and genomics. Much research which would not even be considered are nowdays being excuted in many laboratories as routine. In this chapter, we introduce the currently available NGS platforms, comparing their working theories and reveiwing their advantages and disavantages. We also discuss the future of NGS development and point out that single molecular sequencing would push the technology to the next level for biological sciences. Much of the chapter focuses on the use of NGS technologies in sorghum. Although the acquisition of the first whole-genome sequence in sorghum was carried out primarily using Sanger sequencing, the use of NGS for examining the genome-wide variation was almost synchronized with other work. Interesting genomic variation was found between sweet and grain sorghum. NGS has also been used to examine the transcriptomes of sorghum under various stress conditions. Besides identifying interesting transcriptonal adpatation to stress conditions, these study show that sugar could potentially act as an osmitic adjusting factor via transcriptional regulation. Furthermore, miRNAs are found to be important adaptation to both biotic and abiotic stresses in sorghum. We discuss the use of NGS for further genetic improvement and breeding in sorghum.

AB - The invention and application of Next-Generation Sequencing (NGS) technologies have revolutionized the study of genetics and genomics. Much research which would not even be considered are nowdays being excuted in many laboratories as routine. In this chapter, we introduce the currently available NGS platforms, comparing their working theories and reveiwing their advantages and disavantages. We also discuss the future of NGS development and point out that single molecular sequencing would push the technology to the next level for biological sciences. Much of the chapter focuses on the use of NGS technologies in sorghum. Although the acquisition of the first whole-genome sequence in sorghum was carried out primarily using Sanger sequencing, the use of NGS for examining the genome-wide variation was almost synchronized with other work. Interesting genomic variation was found between sweet and grain sorghum. NGS has also been used to examine the transcriptomes of sorghum under various stress conditions. Besides identifying interesting transcriptonal adpatation to stress conditions, these study show that sugar could potentially act as an osmitic adjusting factor via transcriptional regulation. Furthermore, miRNAs are found to be important adaptation to both biotic and abiotic stresses in sorghum. We discuss the use of NGS for further genetic improvement and breeding in sorghum.

KW - Former LIFE faculty

KW - Sorghum bicolour L.; Quality Declared Seed System

KW - Next generation sequencing

KW - Genetic

KW - genomic variation

KW - molecular breeding

KW - biofuel-associated traits

KW - Association analysis

M3 - Book chapter

SN - 978-1-4822-1008-8

SP - 226

EP - 250

BT - Genetics, genomics and breeding of sorghum

A2 - Wang, Yi-Hong

A2 - Upadhyaya, Hari D.

A2 - Kole, Chittaranjan

PB - CRC Press

ER -

ID: 118579214