Genetic dissection of mammalian ERAD through comparative haploid and CRISPR forward genetic screens

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

Dokumenter

  • Richard T. Timms
  • Sam A. Menzies
  • Iva A. Tchasovnikarova
  • Lea Cecilie Christensen
  • James C. Williamson
  • Robin Antrobus
  • Gordon Dougan
  • Ellgaard, Lars
  • Paul J. Lehner
The application of forward genetic screens to cultured human cells represents a powerful method to study gene function. The repurposing of the bacterial CRISPR/Cas9 system provides an effective method to disrupt gene function in mammalian cells, and has been applied to genome-wide screens. Here, we compare the efficacy of genome-wide CRISPR/Cas9-mediated forward genetic screens versus gene-trap mutagenesis screens in haploid human cells, which represent the existing ‘gold standard’ method. This head-to-head comparison aimed to identify genes required for the endoplasmic reticulum-associated degradation (ERAD) of MHC class I molecules. The two approaches show high concordance (>70%), successfully identifying the majority of the known components of the canonical glycoprotein ERAD pathway. Both screens also identify a role for the uncharacterized gene TXNDC11, which we show encodes an EDEM2/3-associated disulphide reductase. Genome-wide CRISPR/Cas9-mediated screens together with haploid genetic screens provide a powerful addition to the forward genetic toolbox.
OriginalsprogEngelsk
Artikelnummer11786
TidsskriftNature Communications
Vol/bind7
Antal sider10
ISSN2041-1723
DOI
StatusUdgivet - 2016

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